Transcriptome Sequences assembly: De-novo transcriptome assembly of non-model species based on next generation sequencing from Illumine technology.
Annotation of Transcriptome : Transcripts annotation based on sequences similarity to available database sequences (i.e.: NCBI databases and UniProt)
RNA-Seq analysis : Differential expression analysis and cluster analysis. Functional analysis of the differentially expressed genes, including GO term, and pathway enrichment analysis.
Genotype By Sequencing (GBS) data analysis: Genome-wide SNP discovery by combining the power of multiplexed NGS. Tassel-GBS pipeline is used for the analysis.
Variant Calling: Variant calling or SNP discovery based on NGS data. Quality control and filter steps are performed to provide reliable data.
Phylogenetic analysis: Evolution and relationships among genes and species can draw from multiple data sources.
Metagenomic analysis: Identification of microbial and fungi communities from sequences of 16S/18S rRNA and from metagenomic sequencing data.