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*Publications in the last 5 years
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Publications in the last 5 years

2016 

Goldenberg L, Yaniv Y, Choi HJ,  Doron-Faigenboim A, Carmi N, Porat R.  Elucidating the biochemical factors governing off-flavor perception in mandarins.  Postharvest Biol Tec. 2016 October. doi:10.1016/j.postharvbio.2016.06.009:167-179.

Shabat SK, Sasson G, Doron-Faigenboim A, Durman T, Yaacoby S, Berg Miller ME, White BA, Shterzer N, Mizrahi I. Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants. ISME J. 2016 May 6. doi: 10.1038/ismej.2016.62. [Epub ahead of print] PubMed PMID: 27152936.

Gupta K, Kayam G, Faigenboim-Doron A, Clevenger J, Ozias-Akins P, Hovav R. Gene expression profiling during seed-filling process in peanut with emphasis on  oil biosynthesis networks. Plant Sci. 2016 Jul;248:116-27. doi: 10.1016/j.plantsci.2016.04.014. Epub 2016 Apr 28. PubMed PMID: 27181953.

Yaari M, Doron-Faigenboim A, Koltai H, Salame L, Glazer I. Transcriptome analysis of stress tolerance in entomopathogenic nematodes of the genus Steinernema. Int J Parasitol. 2016 Feb;46(2):83-95. doi:10.1016/j.ijpara.2015.08.011. Epub 2015 Nov 17. PubMed PMID: 26598027.

Goldenberg L, Yaniv Y, Doron-Faigenboim A, Carmi N, Porat R. Diversity among mandarin varieties and natural sub-groups in aroma volatiles compositions. J Sci  Food Agric. 2016 Jan 15;96(1):57-65. doi: 10.1002/jsfa.7191. Epub 2015 Apr 24. PubMed PMID: 25824867.

Shiri Barad*, Noa Sela*, Dilip Verma , Amit Dubey, Nofar Glam, Amir Sherman, Dov Prusky, (2016) Fungal and host transcriptome analysis of pH regulated genes during colonization of Penicillium expansum on apple fruits. BMC Genomics 2016 17:330 DOI: 10.1186/s12864-016-2665-7

Luria N, Reingold V, Lachman O, Sela N, Dombrovsky A. (2016) Extended phylogenetic analysis of a new Israeli isolate of Brevicoryne brassicae virus (BrBV-IL) suggests taxonomic revision of the genus Iflavirus. virology journal 13:50. DOI: 10.1186/s12985-016-0500-z.

Reingold V., Lachman O., Sela N., Luria N., Dombrovsky A. (2016) Watermelon fruit rot disease in Israel is caused by a distinct Squash vein yellowing virus (SqVYV) strain. Plant Disease. http://dx.doi.org/10.1094/PDIS-09-15-1040-RE.

Teixeira M.,Sela N.,Ng J.,Casteel C.L.,Peng H.C.,Bekal S., Girke T.,Ghanim M.,Kaloshian I (2016). A novel virus from Macrosiphum euphorbiae with similarities to members of the family Flaviviridae. Journal of General Virology. 27 January, 2016 doi: 10.1099/jgv.0.000414

 

2015

Julca I., Droby S., Sela N., Marcet-Houben M., Gabaldón T. (2015) Contrasting genomic diversity in two closely related postharvest pathogens: Penicillium digitatum and Penicillium expansum. Genome Biol Evol Dec 14, 2015 doi:10.1093/gbe/evv252.

Kaplan E, Sela N, Doron-faigenboim A, Navon-Venezia S, Jurkevitch E, Cytryn E. (2015) Genomic and functional characterization of qnr-encoding plasmids from municipal wastewater biosolid Klebsiella pneumoniae isolates. Front. Microbiol. 6:1354. doi: 10.3389/fmicb.2015.01354

Ostrov I, Sela N, Freed M, Khateb N, Kott-Gutkowski M, Inbar D, Shemesh M. (2015) Draft genome sequence of Bacillus licheniformis S127 isolated from sheep udder clinical infection.Genome Announc 3(5):e00971-15. doi:10.1128/genomeA.00971-15.

Iberkleid, I.,Sela N. and Brown-Miyara S. (2015). Meloidogyne javanica fatty acid- and retinol-binding protein (Mj-FAR-1) regulates expression of lipid-, cell wall-, stress- and phenylpropanoid-related genes during nematode infection of tomato. BMC Genomics 2015 16:272

Ronkin D, Seroussi E, Nitzan T, Doron-Faigenboim A, Cnaani A. Intestinal transcriptome analysis revealed differential salinity adaptation between two tilapiine species. Comp Biochem Physiol Part D Genomics Proteomics. 2015 Mar;13:35-43. doi: 10.1016/j.cbd.2015.01.003. Epub 2015 Jan 26. PubMed PMID: 25637752.

Goldenberg L, Yaniv Y, Kaplunov T, Doron-Faigenboim A, Carmi N, Porat R. Diversity in sensory quality and determining factors influencing mandarin flavor liking. J Food Sci. 2015 Feb;80(2):S418-25. doi: 10.1111/1750-3841.12742. Epub 2015 Jan 5. PubMed PMID: 25559381. 

Yahyaa M, Matsuba Y, Brandt W, Doron-Faigenboim A, Bar E, McClain A, Davidovich-Rikanati R, Lewinsohn E, Pichersky E, Ibdah M. Identification, Functional Characterization, and Evolution of Terpene Synthases from a Basal Dicot. Plant Physiol. 2015 Nov;169(3):1683-97. doi: 10.1104/pp.15.00930. Epub 2015 Jul 8. PubMed PMID: 26157114; PubMed Central PMCID: PMC4634067.

Shalom L, Shlizerman L, Zur N, Doron-Faigenboim A, Blumwald E, Sadka A. Molecular characterization of SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) gene family from Citrus and the effect of fruit load on their expression. Front Plant Sci. 2015 May 27;6:389. doi: 10.3389/fpls.2015.00389. eCollection 2015. PubMed PMID: 26074947; PubMed Central PMCID: PMC4443640.

Shemesh-Mayer E, Ben-Michael T, Rotem N, Rabinowitch HD, Doron-Faigenboim A, Kosmala A, Perlikowski D, Sherman A, Kamenetsky R. Garlic (Allium sativum L.) fertility: transcriptome and proteome analyses provide insight into flower and pollen development. Front Plant Sci. 2015 Apr 28;6:271. doi: 10.3389/fpls.2015.00271. eCollection 2015. PubMed PMID: 25972879; PubMed Central  PMCID: PMC4411974.

Biton I, Doron-Faigenboim A, Jamwal M, Mani Y, Eshed R, Rosen A, Sherman A Ophir R, Lavee S, Avidan B, Ben-Ari G. 2015. Development of a large set of SNP markers for assessing phylogenetic relationships between the olive cultivars composing the Israeli olive germplasm collection. Mol Breeding. 35:107.

Kamenetsky R, Faigenboim A, Shemesh Mayer E, Ben Michael T, Gershberg C, Kimhi S, Esquira I, Rohkin Shalom S, Eshel D, Rabinowitch HD, Sherman A. Integrated transcriptome catalogue and organ-specific profiling of gene expression in fertile garlic (Allium sativum L.). BMC Genomics. 2015 Jan 22;16:12. doi: 10.1186/s12864-015-1212-2. PubMed PMID: 25609311; PubMed Central PMCID: PMC4307630.

Zipor G, Duarte P, Carqueijeiro I, Shahar L, Ovadia R, Teper-Bamnolker P, Eshel D, Levin Y, Doron-Faigenboim A, Sottomayor M, Oren-Shamir M. In planta anthocyanin degradation by a vacuolar class III peroxidase in Brunfelsia calycina flowers. New Phytol. 2015 Jan;205(2):653-65. doi: 10.1111/nph.13038. Epub 2014 Sep 25. PubMed PMID: 25256351.

 

2014

 

Freiman ZE, Doron-Faigenboim A, Dasmohapatra R, Yablovitz Z, Flaishman MA. 2014.  High-throughput sequencing analysis of common fig (Ficus carica L.) transcriptome during fruit ripening. Tree Genetics & Genomes. 10(4-4):923-935.

Goldenberg L, Yaniv Y, Kaplunov T, Doron-Faigenboim A, Porat R, Carmi N. Genetic diversity among mandarins in fruit-quality traits. J Agric Food Chem. 2014 May 28;62(21):4938-46. doi: 10.1021/jf5002414. Epub 2014 May 14. PubMed PMID: 24828369.

Luzzatto-Knaan T, Kerem Z, Doron-Faigenboim A, Yedidia I. Priming of protein  expression in the defence response of Zantedeschia aethiopica to Pectobacterium carotovorum. Mol Plant Pathol. 2014 May;15(4):364-78. PubMed PMID: 24822269.

Shalom L, Samuels S, Zur N, Shlizerman L, Doron-Faigenboim A, Blumwald E, Sadka A. Fruit load induces changes in global gene expression and in abscisic acid (ABA) and indole acetic acid (IAA) homeostasis in citrus buds. J Exp Bot. 2014 Jul;65(12):3029-44. doi: 10.1093/jxb/eru148. Epub 2014 Apr 4. PubMed PMID: 24706719; PubMed Central PMCID: PMC4071824.

Levin, E., Sela N., Raphael G., Feygenberg O., Droby S., Wisniewski, M. (2014) Molecular Interactions between the Biocontrol Agent Metschnikowia fructicola and Citrus Fruit Tissue and Penicillium digitatum. Acta Hort. (ISHS) 1053:37-49.

Ballester A.R., Marcet-Houben M., Levin E., Sela N., Selma-Lázaro C., Carmona L., Wisniewski M., Droby S., González-Candelas L., Gabaldón T. (2014). Genome, transcriptome, and functional analyses of Penicillium expansum provide new insights into secondary metabolism and pathogenicity. Molecular Plant-Microbe Interactions 2014 Oct 22. 

Lapidot M., Gelbart D., Gal-On A., Sela N., Anfoka G., Haj Ahmed F., Abou-Jawada Y., Sobh H., Mazyad H., Aboul-Ata A.E., El-Attar A.K., Ali-Shtayeh M.S., Jamous R.M., Polston J.E., Duffy S.,(2014) Frequent migration of introduced cucurbit-infecting begomoviruses among Middle Eastern countries. Virology journal 2014, 11:181.  

Luria N.*, Sela N.*, Yaari M., Feygenberg O., Kobiler I., Lers A., Prusky D. (2014) De-novo transcriptome assembly of mango fruit peel reveals mechanisms of mango response to hot water treatment. BMC Genomics 2014.  Nov 5; 15:957  doi:10.1186/1471-2164-15-957 *equal contribution.

Ofek-lalzar M., Sela N., Voronov-Goldman M., Green S.J., Hadar Y., Minz D., (2014) Niche and host-associated functional signatures of the root surface microbiome. Nature Communications  2014 Sep 18;5:4950. doi: 10.1038/ncomms5950

 

2013

Firon N, LaBonte D, Villordon A, Kfir Y, Solis J, Lapis E, Perlman TS, Doron-Faigenboim A, Hetzroni A, Althan L, Adani Nadir L. Transcriptional profiling of sweetpotato (Ipomoea batatas) roots indicates down-regulation of lignin biosynthesis and up-regulation of starch biosynthesis at an early stage of storage root formation. BMC Genomics. 2013 Jul 9;14:460. doi: 10.1186/1471-2164-14-460. PubMed PMID: 23834507; PubMed Central PMCID: PMC3716973.

Kolton M., Sela N., Elad Y., Cytryn E., (2013) Comparative genomic analysis indicates that niche adaptation of terrestrial Flavobacteria is strongly linked to plant glycan metabolism. (2013) PLoS ONE 8(9): e76704.

Shemesh M., Pasvolsky R., Sela N., Green S.J., Zakin V. (2013) Draft genome sequence of Alicyclobacillus acidoterrestris strain ATCC 49025. Genome Announcement 2013 Sep 5;1(5).

Rosenwasser S., Fluhr R., Joshi J.R., Leviatan N., Sela N., Hetzroni, A., Friedman H., (2013) ROSMETER: A bioinformatic tool for the identification ROS type and origin. Plant Physiol. August 2013 pp.113.218206.

Dombrovsky A., Glanz E., Lachman O., Sela N., Doron-Faigenboim A., Antignus Y., (2013) The complete genome sequence of PYLCV and its implications on the understanding of evolution dynamics in the genus Polerovirus. (2013) PLoS ONE 2013 8(7): e70722.

Sela N., Lachman O., Reingold V., Dombrovsky A., (2013) A new cryptic virus belonging to the family Partitiviridae was found in watermelon co-infected with Melon necrotic spot virus. 2013 Virus Genes June 18. DOI: 10.1007/s11262-013-0937-8.

Droby, S., Hershkovitz, V., Sela, N., Raphael, G., Kessler, C., Feygenberg, O. and Wisniewski, M. (2013). Biochemical and transcriptomic analysis of host responses to yeast biocontrol agents of postharvest pathogens. Acta Hort. (ISHS) 1012:671-680 

Hershkovitz V.*, Sela N.*, Taha- Salaime L., Liu J., Rafael G., BenDayan C., Aly R., Wisniewski M., Droby  S. (2013) De-novo assembly and Characterization of the Transcriptome of Metschnikowia fructicola reveals differences in gene expression following interaction with Penicillium digitatum and grapefruit peel. BMC Genomics 2013, 14:168 *equal contribution

 

2012

Kolton M., Green S.J., Meller-Harel Y., Sela N., Elad Y., Cytryn E.,(2012) Draft Genome Sequence of Flavobacterium sp. Strain F52, Isolated from the Rhizosphere of Red Pepper (Capsicum annuum L). 2012 Journal of Bacteriology 194 (19), 5462-3.

Sela N., Luria N, Dombrovsky A., (2012) Genome assembly of Bell pepper endornavirus from small RNA. 2012 Journal of virology Vol. 86 doi:10.1128/JVI.00983-12

Blum S., Sela N., Heller H.D., Sela S., Leitner G., (2012) Genome analysis of bovine mastitis associated Escherichia coli O32:H37 strain P4. J. Bacteriol. 2012 vol. 194 no. 14 3732

Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, Gong L, Grimwood J, Grover C, Grupp K, Hu G, Lee TH, Li J, Lin L, Liu T, Marler BS, Page JT, Roberts AW, Romanel E, Sanders WS, Szadkowski E, Tan X, Tang  H, Xu C, Wang J, Wang Z, Zhang D, Zhang L, Ashrafi H, Bedon F, Bowers JE, Brubaker CL, Chee PW, Das S, Gingle AR, Haigler CH, Harker D, Hoffmann LV, Hovav  R, Jones DC, Lemke C, Mansoor S, ur Rahman M, Rainville LN, Rambani A, Reddy UK,  Rong JK, Saranga Y, Scheffler BE, Scheffler JA, Stelly DM, Triplett BA, Van Deynze A, Vaslin MF, Waghmare VN, Walford SA, Wright RJ, Zaki EA, Zhang T, Dennis ES, Mayer KF, Peterson DG, Rokhsar DS, Wang X, Schmutz J. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature. 2012 Dec 20;492(7429):423-7. doi: 10.1038/nature11798. PubMed PMID: 23257886.

Kreimer A, Doron-Faigenboim A, Borenstein E, Freilich S. NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species. Bioinformatics. 2012 Aug 15;28(16):2195-7. doi: 10.1093/bioinformatics/bts323. Epub 2012 Jun 4. Erratum in: Bioinformatics. 2012  Oct 1;28(19):2560. PubMed PMID: 22668793.

Brown Kav A, Sasson G, Jami E, Doron-Faigenboim A, Benhar I, Mizrahi I. Insights into the bovine rumen plasmidome. Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5452-7. doi: 10.1073/pnas.1116410109. Epub 2012 Mar 19. PubMed PMID: 22431592; PubMed Central PMCID: PMC3325734.

 

 

 

 

 

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