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STATE OF ISRAEL I MINISTRY OF AGRICULTURE AND RURAL DEVELOPMENT   
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About Institutes Public Relations Technology Transfer Students\International Library Administration
שלח באימייל הדפס
 
Name: Adi Faigenboim, Ph.D. (Engineer/Technician)
Units: Plant SciencesVegetable and Field Crops
Tel:  03-9683877
Cell: 0506220531
Email:    adif@volcani.agri.gov.il
Office location:Plant Sciences Institute Bld. Room 13
Address:

Publications:

1: Dombrovsky A, Glanz E, Lachman O, Sela N, Doron-Faigenboim A, Antignus Y. The

Complete Genomic Sequence of Pepper Yellow Leaf Curl Virus (PYLCV) and Its

Implications for Our Understanding of Evolution Dynamics in the Genus

Polerovirus. PLoS One. 2013 Jul 30;8(7):e70722. doi:

10.1371/journal.pone.0070722. Print 2013. PubMed PMID: 23936244; PubMed Central

PMCID: PMC3728342.

2: Firon N, LaBonte D, Villordon A, Kfir Y, Solis J, Lapis E, Perlman TS,

Doron-Faigenboim A, Hetzroni A, Althan L, Adani Nadir L. Transcriptional

profiling of sweetpotato (Ipomoea batatas) roots indicates down-regulation of

lignin biosynthesis and up-regulation of starch biosynthesis at an early stage of

storage root formation. BMC Genomics. 2013 Jul 9;14:460. doi:

10.1186/1471-2164-14-460. PubMed PMID: 23834507; PubMed Central PMCID:

PMC3716973.

3: Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D,

Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke

MV, Gong L, Grimwood J, Grover C, Grupp K, Hu G, Lee TH, Li J, Lin L, Liu T,

Marler BS, Page JT, Roberts AW, Romanel E, Sanders WS, Szadkowski E, Tan X, Tang

H, Xu C, Wang J, Wang Z, Zhang D, Zhang L, Ashrafi H, Bedon F, Bowers JE,

Brubaker CL, Chee PW, Das S, Gingle AR, Haigler CH, Harker D, Hoffmann LV, Hovav

R, Jones DC, Lemke C, Mansoor S, ur Rahman M, Rainville LN, Rambani A, Reddy UK,

Rong JK, Saranga Y, Scheffler BE, Scheffler JA, Stelly DM, Triplett BA, Van

Deynze A, Vaslin MF, Waghmare VN, Walford SA, Wright RJ, Zaki EA, Zhang T, Dennis

ES, Mayer KF, Peterson DG, Rokhsar DS, Wang X, Schmutz J. Repeated

polyploidization of Gossypium genomes and the evolution of spinnable cotton

fibres. Nature. 2012 Dec 20;492(7429):423-7. doi: 10.1038/nature11798. PubMed

PMID: 23257886.

4: Kreimer A, Doron-Faigenboim A, Borenstein E, Freilich S. NetCmpt: a

network-based tool for calculating the metabolic competition between bacterial

species. Bioinformatics. 2012 Aug 15;28(16):2195-7. doi:

10.1093/bioinformatics/bts323. Epub 2012 Jun 4. Erratum in: Bioinformatics. 2012

Oct 1;28(19):2560. PubMed PMID: 22668793.

5: Ashkenazy H, Penn O, Doron-Faigenboim A, Cohen O, Cannarozzi G, Zomer O, Pupko

T. FastML: a web server for probabilistic reconstruction of ancestral sequences.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W580-4. doi: 10.1093/nar/gks498.

Epub 2012 May 31. PubMed PMID: 22661579; PubMed Central PMCID: PMC3394241.

6: Brown Kav A, Sasson G, Jami E, Doron-Faigenboim A, Benhar I, Mizrahi I.

Insights into the bovine rumen plasmidome. Proc Natl Acad Sci U S A. 2012 Apr

3;109(14):5452-7. doi: 10.1073/pnas.1116410109. Epub 2012 Mar 19. PubMed PMID:

22431592; PubMed Central PMCID: PMC3325734.

7: Lenz G, Doron-Faigenboim A, Ron EZ, Tuller T, Gophna U. Sequence features of

E. coli mRNAs affect their degradation. PLoS One. 2011;6(12):e28544. doi:

10.1371/journal.pone.0028544. Epub 2011 Dec 7. PubMed PMID: 22163312; PubMed

Central PMCID: PMC3233582.

8: Rubinstein ND, Doron-Faigenboim A, Mayrose I, Pupko T. Evolutionary models accounting

for layers of selection in protein-coding genes and their impact on

the inference of positive selection. Mol Biol Evol. 2011 Dec;28(12):3297-308.

doi: 10.1093/molbev/msr162. Epub 2011 Jun 20. PubMed PMID: 21690564.

9: Loe-Mie Y, Lepagnol-Bestel AM, Maussion G, Doron-Faigenboim A, Imbeaud S,

Delacroix H, Aggerbeck L, Pupko T, Gorwood P, Simonneau M, Moalic JM. SMARCA2 and

other genome-wide supported schizophrenia-associated genes: regulation by

REST/NRSF, network organization and primate-specific evolution. Hum Mol Genet.

2010 Jul 15;19(14):2841-57. doi: 10.1093/hmg/ddq184. Epub 2010 May 10. PubMed

PMID: 20457675.

10: Lev-Maor G, Goren A, Sela N, Kim E, Keren H, Doron-Faigenboim A,

Leibman-Barak S, Pupko T, Ast G. The "alternative" choice of constitutive exons

throughout evolution. PLoS Genet. 2007 Nov;3(11):e203. PubMed PMID: 18020709;

PubMed Central PMCID: PMC2077895.

11: Mayrose I*, Doron-Faigenboim A*, Bacharach E, Pupko T. Towards realistic codon

models: among site variability and dependency of synonymous and non-synonymous

rates. Bioinformatics. 2007 Jul 1;23(13):i319-27. PubMed PMID: 17646313. * These authors

contributed equally

12: Stern A*, Doron-Faigenboim A*, Erez E, Martz E, Bacharach E, Pupko T. Selecton

2007: advanced models for detecting positive and purifying selection using a

Bayesian inference approach. Nucleic Acids Res. 2007 Jul;35(Web Server

issue):W506-11. Epub 2007 Jun 22. PubMed PMID: 17586822; PubMed Central PMCID:

PMC1933148. * These authors contributed equally

13: Pupko, T., Doron-Faigenboim, A., Liberles DA., and Cannarozzi GM. 2007. Probabilistic

 models and their impact on the accuracy of reconstructed ancestral protein sequences. In

Liberles DA (Editor). Ancestral sequence reconstruction. Oxford University Press.

14:Doron-Faigenboim A, Pupko T. A combined empirical and mechanistic codon

model. Mol Biol Evol. 2007 Feb;24(2):388-97. Epub 2006 Nov 16. PubMed PMID:

17110464.

15: Doron-Faigenboim A, Stern A, Mayrose I, Bacharach E, Pupko T. Selecton: a

server for detecting evolutionary forces at a single amino-acid site.

Bioinformatics. 2005 May 1;21(9):2101-3. Epub 2005 Jan 12. PubMed PMID: 15647294.

 

Updated on: 08/06/15 13:11
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